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Review
Hypothetical Regulation of Folate Biosynthesis and Strategies for Folate Overproduction in Lactic Acid Bacteria
1Department of Food Science and Technology, Faculty of Agricultural Engineering and Technology and 2Southeast Asian Food and Agricultural Science and Technology (SEAFAST) Center, IPB University (Bogor Agricultural University), Bogor 16680, Indonesia
Correspondence to:This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Prev Nutr Food Sci 2023; 28(4): 386-400
Published December 31, 2023 https://doi.org/10.3746/pnf.2023.28.4.386
Copyright © The Korean Society of Food Science and Nutrition.
Abstract
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Keywords
INTRODUCTION
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Folate (vitamin B9) is a conjugated compound composed of a pteridine ring, para-aminobenzoic acid (PABA), and glutamate (Combs, 2008). Folates exist in various forms that are characterized by the oxidation level of the pteridine ring, substituent bound to the N5 and/or N10 position of the tetrahydrofolate (THF) molecule, and number of glutamate residues comprising the polyglutamate tail (Fig. 1). If the pteridine ring is fully oxidized, folate is known as folic acid; if it is partially reduced, it is known as dihydrofolate (DHF); and if it is fully reduced, it is known as THF. Examples of forms with different substituents bound to the N5 and N10 positions of the THF molecule include 5-methyl-THF (5-MTHF), 5-formyl-THF, 10-formyl-THF, 5,10 methylene-THF, 5-formimino-THF, and 5,10-methenyl-THF (Saini et al., 2016; Saubade et al., 2017). Mono-, di-, and triglutamate folates contain one to three glutamate residues in the polyglutamate tail, whereas polyglutamate folates contain more than three glutamate residues (Combs, 2008; Saini et al., 2016).
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Figure 1. Chemical structure of (A) folic acid (fully oxidized), (B) dihydrofolate (partially reduced), (C) tetrahydrofolate (THF, completely reduced). (D) THF derivatives with substituents bound to the N5 and/or N10 position.
THF and its derivatives act as cofactors, accepting and donating carbon atoms in one-carbon metabolic reactions, such as DNA synthesis, amino acid synthesis, and the methylation cycle (de Crécy-Lagard et al., 2007; Green and Matthews, 2007; Ohrvik and Witthoft, 2011). DHF is an inactive form of folate that must be reduced to THF during folate biosynthesis in various green plants, bacteria, and yeasts (Green and Matthews, 2007; Wegkamp, 2008). In contrast, folic acid is a synthetic form of folate that is chemically produced in the monoglutamate form and bears no substituents at the N5 and N10 positions (Fig. 1) (Mahara et al., 2019).
Owing to its role as an essential micronutrient, folate requirements in the human body must be adequately fulfilled, particularly during pregnancy (Castaño et al., 2017). Inadequate folate intake during pregnancy can cause various problems, including the risk of miscarriage or stillbirth, low birth weight, preeclampsia, prematurity, and neural tube defects (Castaño et al., 2017). However, the use of synthetic folate as a dietary supplement and fortifier has long been avoided, owing to its potential long-term adverse effects on human health (Laiño et al., 2014; Patel and Sobczyńska-Malefora, 2017; Greppi et al., 2017). As an alternative,
Previous gene overexpression studies aimed at to generating folate overproducing bacteria have reported the possibility of feedback inhibition via folate-biosynthetic enzymes (Sybesma et al., 2003a; Wegkamp et al., 2007). However, to date, no review has focused on the regulation of folate biosynthesis in LAB or the role of folate-biosynthetic genes in folate-producing and folate-consuming bacteria. This information is expected to lead to an improved understanding of the behavioral patterns of LAB during folate production. Considering previous studies, this review discusses various hypotheses related to the regulation of folate biosynthesis, with the aim of adding to the understanding of how LAB regulate folate synthesis, excretion, and consumption.
FOLATE-PRODUCING LAB
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Various genera and species of LAB produce both intracellular and extracellular folate, and this ability is highly strain dependent (Laiño et al., 2012; Greppi et al., 2017). Folate-producing LAB can be isolated at varying levels from various sources, including food sources (raw or fermented) and the digestive tract (Table 1). Strains obtained from the digestive tract can be used as folate producing probiotics, whereas those isolated from fermented foods can be used as starter microbes to manufacture folate-rich food products (Rossi et al., 2011).
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Table 1 . Folate-producing lactic acid bacteria from various sources
Species (no. of strains tested) Source Test medium No. of folate-producing strains Folate production (ng/mL) Reference Lactobacillus sp. (50)Traditional Iranian yogurt and doogh Skim milk medium 50 2.8~66.6 Dana et al., 2010 Streptococcus thermophilus (51)Artisanal Argentinean yogurt FACM 32 4.3~76.6 Laiño et al., 2012 Lactobacillus delbrueckii ssp.bulgaricus (41)4 3.6~86.2 Lactiplantibacillus plantarum (18)Artisanal Argentinean dairy products FACM 15 1.4~57.2 Laiño et al., 2014 Lactobacillus acidophilus (8)2 7.4~37.2 Limosilactobacillus fermentum (12)2 0.2~6.9 Lacticaseibacillus paracasei ssp.paracasei (12)4 9.2~38.7 Lacticaseibacillus casei ssp.casei (3)0 − L.casei (1)1 1.5 Lactobacillusamylovorus (1)1 81.2 Lactiplantibacillus plantarum (2)Cereals FACM 2 30.7~57.3 Salvucci et al., 2016 Limosilactobacillus fermentum (5)5 5.8~51.1 Lactobacillus pentosus (3)3 37.9~61.8 Levilactobacillus brevis (1)1 41.3 Pediococcus acidilactici (6)6 38.6~55.8 Pediococcus pentosaceus (1)1 51.7 Latilactobacillus sakei (28)Tocosh (fermented potato porridge) FACM 28 35~138 Mosso et al., 2018 Lacticaseibacillus casei (9)4 50~69 Limosilactobacillus fermentum (1)1 29 Levilactobacillus brevis (1)0 − Lactobacillus sp. (2)1 58 Streptococcus thermophilus (8)Fresh milk and several kinds of cheese (cow, goat, and buffalo) FACM 8 5.06~147.67 Tarrah et al., 2018 Bifidobacterium adolescentis (10)Human and animals Folate-free semi-synthetic medium (SM7) 17 0.6~82.0 Pompei et al., 2007 Bifidobacterium animalis (7)Bifidobacterium bifidum (6)Bifidobacterium breve (15)Bifidobacterium catenulatum (1)Bifidobacterium cuniculi (3)Bifidobacterium dentium (1)Bifidobacterium globosom (2)Bifidobacterium infantis (5)Bifidobacterium lactic (1)Bifidobacterium longum (17)Bifidobacterium magnum (1)Bifidobacterium pseudocatenulatum (3)Bifidobacterium suis (1)Bifidobacterium thermophilus (1)Bifidobacterium sp. (2)B. adolescentis (3)Feces of adults and children FFM 10 <10,000~92,950 D’Aimmo et al., 2012 B. bifidum (3)B. breve (1)B. catenulatum (2)B. longum (5)B. pseudocatenulatum (1)B. animalis (3)Animal feces FACM, folic acid casei medium; FFM, folate-free medium.
Folate synthesis in cells and its excretion into the medium are critical for understanding the potential applications of such systems in food. For example, extracellular folate produced by LAB can increase folate levels in fermented food products. Folate-producing probiotics can be utilized more effectively as producers of extracellular folate because their cells are not lysed in the digestive tract; therefore, they can colonize the colon to continuously provide extracellular folate to the body. In the context of nonprobiotic folate producers, intracellular folate can be produced following cell lysis in the digestive tract, where it can subsequently be absorbed (LeBlanc et al., 2015; Greppi et al., 2017).
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Folate biosynthesis requires three precursors as the main building blocks: guanosine triphosphate (GTP), PABA, and glutamate. The GTP molecule, which forms the pteridine component of the folate structure, is derived from purine biosynthesis and is an essential molecule synthesized by all LAB (Saubade et al., 2017). Although glutamate can be synthesized through the conversion of α-ketoglutarate from glycolytic intermediates, almost no LAB can synthesize this compound (Lapujade et al., 1998); therefore, glutamate is usually obtained from an external supply (i.e., taken up from the medium) via the salvage pathway (Fig. 2) (de Crécy-Lagard et al., 2007; Iyer and Tomar, 2009). The PABA precursor is derived from chorismate and synthesized via a pathway that is also involved in the aromatic amino acid, glycolysis, pentose phosphate, and shikimate pathways (Rad et al., 2016). Only certain LAB can synthesize this precursor (Rossi et al., 2011); therefore, PABA tends to be obtained from an external supply via the salvage route (Fig. 2) (de Crécy-Lagard et al., 2007).
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Figure 2. Folate biosynthesis and salvage pathways in lactic acid bacteria and the genes involved (Orsomando et al., 2006; de Crécy-Lagard et al., 2007; Noiriel et al., 2007; Wegkamp, 2008; Rad et al., 2016). The black arrows indicate the folate biosynthesis pathway, followed by the names of the genes that encode folate biosynthetic enzymes. The blue arrows show the intermediate salvage pathway (PABA and glutamate) obtained from the oxidative breakdown of folate (marked by red dashed arrows) in the cell and taken up from outside the cell (when intermediate compounds are available in the environment or medium). The green arrows indicate intact folate salvage pathways for folic acid and THF (mono). GTP, guanosine triphosphate; PABA, para-aminobenzoic acid; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; THF (mono), tetrahydrofolate-monoglutamate; THF (poly), tetrahydrofolate-polyglutamate; PABA-Glu, PABA-glutamate; NI, not identified.
The
In the first step of folate biosynthesis, the genes required for the formation of the PABA precursor include
The presence of folate-biosynthetic enzyme-encoding genes has been investigated in various LAB species
The DHFR enzyme, encoded by
The
FOLATE SALVAGE PATHWAY
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
In the folate-biosynthetic pathway, the availability of the three folate precursors (DHPPP, PABA, and glutamate) is critical for modulating THF synthesis. LAB that lack genes for the biosynthesis of these three substances rely on the salvage pathway, which occurs either within the cell or using compounds that are taken up from outside the cell (i.e., when intermediate compounds are available in the environment or medium). In parasites, such as
The first step in folate biosynthesis is the formation of pterin compounds (e.g., DHPPP). The pterins are a family of aromatic compounds that function as cofactors for aromatic hydroxylases and are involved in the metabolism of aromatic amino acids, such as phenylalanine, tyrosine, and tryptophan (Scott et al., 2000; Noiriel et al., 2007). To ensure metabolic activity, pterin must be present in its reduced form (i.e., dihydropterin for folate biosynthesis or tetrahydropterin as a cofactor) (Noiriel et al., 2007). However, pterin is highly unstable and easily oxidized to generate its aromatic form. The reduction of pterin to THF also renders it more susceptible to oxidative breakdown, resulting in the production of oxidized pterin compounds, such as dihydropterin-6-aldehyde, tetrahydropterin-6-aldehyde, PABA-Glu (
Only pterin and folate auxotrophic parasites, such as
Another component required for folate biosynthesis is PABA, which can be obtained via PABA biosynthetic and salvage pathways (Fig. 2). The PABA salvage pathway begins with the oxidative breakdown of folate, which leads to the generation of PABA monoglutamate (PABA-Glu) or PABA-Glun (Orsomando et al., 2006; Noiriel et al., 2007). PABA-Glu can be reused for folate biosynthesis in two ways: through direct processing by the DHPS enzyme in the PABA-Glu form or via hydrolysis into PABA and glutamate (catalyzed by intracellular aminoacyl aminohydrolase or carboxypeptidase G enzymes) and further processing of PABA by DHPS (Fig. 2) (Hussein et al., 1998; Orsomando et al., 2006). Furthermore, PABA can be salvaged from exogenous sources in the environment or through medium supplementation (de Crécy-Lagard et al., 2007). Therefore, folate-producing bacteria that lack the PABA biosynthetic ability can still produce folate from supplemented PABA via the salvage pathway.
Glutamate can also be obtained via a salvage pathway (Orsomando et al., 2006; Wegkamp, 2008), which is derived from the oxidative breakdown products of folate to produce PABA-Glu or PABA-Glun. Free monoglutamate (Glu) and polyglutamate (Glun) from both products can be reused for folate biosynthesis after hydrolysis by intracellular aminoacyl aminohydrolases or carboxypeptidase G. Free monoglutamate can then be processed further by the DHFS enzyme (encoded by the
All folate-requiring bacteria can take up intact folate, including folic acid and THF-monoglutamate, via intact folate salvage pathways (Fig. 2) (de Crécy-Lagard et al., 2007). As a synthetic form of folate, folic acid can only be obtained through medium supplementation. In contrast, THF-monoglutamate can be salvaged from natural folate in foods and from bacterial folates in both fermented food and the digestive tract (de Crécy-Lagard et al., 2007; Engevik et al., 2019). Therefore, the presence of folate-producing bacteria in fermented foods and the colon benefits other bacterial populations because folate produced by folate-producing bacteria can be utilized by other folate-consuming bacteria.
FOLATE-EFFICIENT BACTERIA
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Most bacteria (known as folate-efficient bacteria) naturally produce metabolites for growth only when needed; thus, their folate production levels are generally not excessive (Pompei et al., 2007; Rossi et al., 2011). In addition, when the required folate level is reached, the bacteria usually halt their production. Moreover, folate is consumed rather than resynthesized when it is available in the media (Mahara et al., 2021). These bacteria must possess specific metabolic regulations that can efficiently control folate biosynthesis in their cells (Scott et al., 2000). Despite an incomplete understanding of folate-biosynthetic regulation, several studies have identified a possible mechanism for feedback inhibition via the end products of folate-biosynthetic enzymes. Such regulation may include inhibition of DHFR enzyme activity (encoded by
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Figure 3. Summary of the hypothetical feedback inhibition mechanism of folate biosynthesis in lactic acid bacteria. GTP, guanosine triphosphate; PABA, para-aminobenzoic acid; HPPK, hydroxymethyl dihydropterin pyrophosphokinase; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; DHPS, dihydropteroate synthase; DHFR, dihydrofolate reductase.
The activity of the DHFR enzyme in catalyzing the conversion of DHF to THF is possibly inhibited by the final product, THF. Indeed, Sybesma et al. (2003a) reported that increasing folate production in
In addition to DHFR and DHPS, the activity of the HPPK enzyme, which converts 6-hydroxymethyl-7,8-di-hydropterin to DHPPP, can also be inhibited by its final product, DHPPP, wherein the rate of DHPPP formation is highly dependent on its utilization by the DHPS enzyme (Mouillon et al., 2002; Meucci et al., 2018). In this context, Laiño et al. (2019) reported a feedback inhibition mechanism for the expression of the
The activities of folate-biosynthetic enzymes can be controlled not only by their own end products, but also by the end products of other enzymes involved in the folate-biosynthetic pathway (Fig. 3). DHPS may also be regulated by DHF and THF, which are end products of other enzymes involved in folate biosynthesis. Both products had relatively low
Intermediate one-carbon metabolic products can also regulate folate biosynthesis. For example, the methionine repressor (
Currently, little is known about the regulation of the DHNA enzyme encoded by
FOLATE-OVERPRODUCING BACTERIA
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Some folate-producing bacteria can synthesize folate beyond their growth requirements, and are not influenced by the presence or absence of folate in the medium (Pompei et al., 2007). These folate-overproducing bacteria can be found naturally (Greppi et al., 2017; Albano et al., 2020) or can be produced through genetic engineering (Sybesma et al., 2003a; Wegkamp et al., 2007). Unlike folate-efficient bacteria, folate-overproducing bacteria do not regulate folate biosynthesis in their cells; therefore, the available folate in the medium does not lead to the downregulation of folate. In this context, Pompei et al. (2007) reported that folate levels produced by
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Table 2 . Species of folate-overproducing lactic acid bacteria
Species No. of strains tested No. of folate-overproducing strains Folate production (ng/mL) Reference Limosilactobacillus fermentum 69 60 0.3~120.9 Greppi et al., 2017 Lactiplantibacillus plantarum 21 17 3.1~110.7 Lactobacillus paraplantarum 6 5 4.5~16.2 Pediococcus acidilactici 16 10 0.9~16.5 Pediococcus pentosaceus 37 0 − Lactiplantibacillus plantarum 15 15 5.64~34.41 Albano et al., 2020 Lactococcus lactis 15 1 1.21 Streptococcus thermophilus 8 1 10.46 Lactobacillus delbrueckii ssp.bulgaricus 6 6 2.86~40 Lacticaseibacillus casei 7 7 3.33~7.29 Lacticaseibacillus rhamnosus 7 3 1.28~8.87 Lacticaseibacillus paracasei 2 2 1.50
Despite the wide variety of folate-overproducing LAB species, the discovery of folate overproducers remains a complex task. For example, Mahara et al. (2021) found that three folate-producing LAB (
FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
The stress-resistance method is a classic mutagenesis technique that can trigger spontaneous and directed mutagenesis to obtain mutants with desired phenotypic characteristics (Wegkamp, 2008; Renault, 2010). In this process, microorganisms are exposed to compounds that can inhibit their biosynthetic pathways, such as chemical analogs of targeted metabolites or intermediates (Wegkamp, 2008; Stanbury et al., 2017). Owing to their highly similar structures, these metabolic analogs can compete for binding to biosynthetic enzymes by imitating their control properties, interfering with metabolite biosynthesis, and inhibiting growth (Stanbury et al., 2017). In analog-resistant mutants, this condition triggers excessive production of analogous metabolites, providing additional opportunities for binding to the enzyme. As a result, the enzyme becomes resistant to analog inhibition and loses control of the end-product feedback inhibition (Kumar and Gomes, 2005; Wegkamp, 2008; Stanbury et al., 2017). When regrown in analog-free media, resistant mutants overproduce metabolites without inhibition and excrete them into the medium (Kumar and Gomes, 2005).
The mechanism of analog stress resistance can also be considered in the context of the folate-biosynthetic pathway, which is inhibited by folate analogs and analogs of folate intermediates. For example, Wegkamp (2008) reported that a genetically engineered strain of the folate overproducer
Folate overproduction, which can lead to methotrexate resistance, may occur because high intracellular folate production provides additional possibilities to compete with methotrexate for binding to the DHFR enzyme. Thus, the presence of methotrexate did not affect the bacterial growth. However, this resistance mode is more effective if the bacteria are grown in media lacking folate and folate-dependent metabolites, such as purines (inosine, guanine, adenine, and xanthine), pyrimidines (orotic acid, thymidine, and uracil), glycine, methionine, and pantothenate. The folate-dependent metabolites in the media neutralize the growth inhibitory effect of methotrexate; therefore, the resulting bacterial growth is not considered a resistance effect of folate overproduction but is instead due to the presence of folate-dependent metabolites in the media (Harvey, 1973; Wegkamp et al., 2009). Wegkamp (2008) also reported that folate production by
Previous studies have successfully applied this selection method to folate analog-resistant mutants to obtain folate-overproducing mutants (Wegkamp et al., 2009; Zhang et al., 2020). For example, Wegkamp et al. (2009) reported that 1 out of 576 single colonies of
However, the generated mutants that exhibit the folate overproduction phenotype frequently revert to their wild-type phenotype after repeated growth in media without the required analogs. In this context, Wegkamp (2008) reported that the high degree of folate production by methotrexate-resistant mutants of
FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
As an alternative strategy for producing folate-overproducing bacteria, microbial genetic engineering can be carried out to strengthen folate-biosynthetic pathways and shift the flux of specific metabolites to target metabolite bioproduction. This can be achieved by inactivating genes, suppressing the expression of unwanted genes, and/or controlling the overexpression of specific genes (Sybesma et al., 2003a; Yang et al., 2020). Reactions that inhibit the accumulation of certain metabolites can be blocked or reduced, whereas reactions that promote the biosynthesis of these metabolites can be amplified (Yang et al., 2020). As outlined in Table 3, genetic modifications have been demonstrated to increase extracellular folate production and alter the distribution and accumulation of intracellular folate. Although the regulation of folate biosynthesis in microorganisms has yet to be fully identified and understood (Wegkamp, 2008; Mahara et al., 2021), several factors that limit folate biosynthesis, such as feedback inhibition of several folate-biosynthetic genes, reversible conversion of the folate form, and complex metabolic pathways, may also influence the application of genetic engineering techniques to construct folate-overproducing strains (Sybesma et al., 2003a; Lu et al., 2019; Yang et al., 2020).
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Table 3 . Folate overproduction in metabolically engineered strains
Microorganisms Genetic engineering techniques Results Reference Lactococcus lactis MG1363Overexpression of folKE Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Sybesma et al., 2003a Overexpression of folKE andfolP Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Overexpression of folKE andfolC Increasing the production of extracellular 4-fold (±10→±40 ng/mL) and intracellular folate 3-fold (±50→±150 ng/mL) Overexpression of folA There is no increase in extracellular folate production, and intracellular folate production decreases 2-fold (±75→±35 ng/mL) Lactococcus lactis NZ9000Cloning and expression of the hgh gene (human γ-glutamyl hydrolase )Increasing the production of extracellular folate 6-fold (±10→±60 ng/mL) Sybesma et al., 2003c Lactococcus lactis NZ9000Overexpression of PABA genes ( pabA andpabBC )There is no increase in folate production Wegkamp et al., 2007 Overexpression of PABA and folate genes ( folB ,folP ,folKE ,folQ ,folC )Increasing the level of total folate (91.7→2,700 ng/mL) Ashbya gossypii ATCC 10895Overexpression of AgFOL1 andAgFOL3 ; or overexpression ofAgFOL1 andAgFOL2 Increasing the level of total folate up to approximately 2.5-fold Serrano-Amatriain et al., 2016 Overexpression of AgFOL2 andAgFOL3 Increasing the level of total folate up to 11-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 Increasing the level of total folate up to 16-fold (680 ng/mL) Deletion of AgMET7 (FPGS)Increasing the level of total folate up to 5.7-fold (292.15 ng/mL), with the increasing proportions of extracellular folate ±30% Repression of AgRIB1 (GTP cyclohydrolase II)Increasing the level of total folate up to 4.2-fold Deletion of ADE12 (adenylosuccinate synthase)Decreasing the level of total folate Deletion of ADE12 andAgMET7 Increasing the level of total folate up to 11.9-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; and deletion ofADE12 Increasing the level of total folate up to 15-fold (677 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; repression ofAgRIB1 ; and deletion ofADE12 Increasing the level of total folate up to 21-fold (964 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; deletion ofAgMET7 andADE12 Increasing the level of total folate up to 51-fold (2,000 ng/mL) Overexpression of AgFOL2 andAgFOL3 ; deletion ofAgMET7 andADE12 ; and repression ofAgRIB1 Increasing the level of total folate up to 146-fold (6,595 ng/mL) Bacillus subtilis 168Deletion of yitJ There is no increase in folate production Yang et al., 2020 Deletion of yitJ ; cloning and overexpression ofmetF Increasing the production of 5-MTHF 22.3-fold
(10.28→229.62 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF Increasing the production of 5-MTHF 24.3-fold (10.28→250 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF anddfrA Increasing the production of 5-MTHF 26.4-fold (10.28→271.64 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA , andfolC Increasing the production of 5-MTHF 38.9-fold (10.28→±400 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC , andpabB Increasing the production of 5-MTHF 38.9-fold
(10.28→±400 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB , andfolE Increasing the production of 5-MTHF 48.6-fold (10.28→±500 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA Increasing the production of 5-MTHF 93.4-fold
(10.28→960.27 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpanB3 Increasing the production of 5-MTHF 124.5-fold (10.28→1,280 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofthyA1 Increasing the production of 5-MTHF 135.2-fold (10.28→1,390 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA1 Increasing the production of 5-MTHF 140-fold
(10.28→1,440 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression oftrpE3 Increasing the production of 5-MTHF 145-fold
(10.28→1,490 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA2 Increasing the production of 5-MTHF 154-fold
(10.28→1,584.34 ng/mL)Lactococcus lactis NZ9000Overexpression of metF Increasing the production of intracellular 5-MTHF up to 18 ng/mL Lu et al., 2019 Overexpression of dfrA There is no increase in folate production Overexpression of thyA There is no increase in folate production Overexpression of glyA There is no increase in folate production Overexpression of folD There is no increase in folate production Overexpression of metF anddfrA Increasing the production of intracellular 5-MTHF up to ±30 ng/L Overexpression of metF andglyA Increasing the production of intracellular 5-MTHF up to ±33 ng/L Overexpression of metF andthyA Increasing the production of intracellular 5-MTHF up to ±23 ng/L Overexpression of metF ,glyA , andfolE Increasing the production of intracellular 5-MTHF up to ±50 ng/L Overexpression of metF ,dfrA , andfolE Increasing the production of intracellular 5-MTHF up to ±73 ng/L Overexpression of metF ,dfrA ,folE , and the G6PDH geneIncreasing the production of intracellular 5-MTHF up to ±100 ng/L Overexpression of metF ,dfrA ,folE , the G6PDH gene, andfau Increasing the production of intracellular 5-MTHF up to ±132 ng/L
In the first step of the folate-biosynthetic pathway (Fig. 4), which utilizes GTP as a precursor, the
-
Figure 4. Schematic of genetic engineering of genes in lactic acid bacteria to develop folate overproducers, based on previous studies. The blue arrows indicate that the gene overexpression technique increased folate productivity, whereas the red arrows indicate no increase. Blue circles represent gene repression and blue crossed circles represent gene deletion; both indicate an increase in folate productivity. GTP, guanosine triphosphate; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; PABA, para-aminobenzoic acid; DHP, dihydropteroate; DHF, dihydrofolate; THF (mono), tetrahydrofolate-monoglutamate; THF (poly), tetrahydro-folate-polyglutamate.
It is also possible that an increase in extracellular folate flux may occur because of the insufficient capacity of the FPGS enzyme to elongate the polyglutamate tail of all extracellular folate produced, because an elongated polyglutamate tail is required for folate retention in cells. When an increase in the extracellular folate flux is followed by an increase in the capacity of FPGS, a shift from extracellular folate flux to intracellular folate accumulation occurs. Under these circumstances, folate retention in the cell increases, leading to an increase in the intracellular folate distribution (Sybesma et al., 2003a). In contrast, when the FPGS enzyme is removed, the production of extracellular folate increases significantly because the produced folate does not possess the polyglutamate tails required for cell retention, and folate is easily excreted from the cell. Deletion of the gene encoding FPGS (
In contrast to FPGS, the GGH enzyme (encoded by the
In addition to being a folate precursor, GTP is also a substrate for the biosynthesis of riboflavin; therefore, the availability of GTP in the cell is reduced for the folate-biosynthetic pathway (Fig. 4). Although deletion of the
The overexpression of folate-biosynthetic genes that regulate feedback inhibition (e.g.,
The overexpression of
In recent years, genetic engineering techniques have focused on strategies to increase the biosynthetic flux of 5-MTHF because of its higher bioavailability compared with other forms of folate (Yang et al., 2020; Lu et al., 2019). However, accumulation of 5-MTHF in cells is limited because the conversion of various forms of folate in the 5 MTHF biosynthetic pathway is reversible and involves complex metabolic pathways (Fig. 4) (Lu et al., 2019). Therefore, to shift the metabolic flux to 5-MTHF bioproduction, reactions that inhibit 5-MTHF accumulation must be blocked, whereas those that enhance 5 MTHF biosynthesis must be amplified (Yang et al., 2020). In a study by Lu et al. (2019), the overexpression of several enzyme-encoding genes with reversible activities, such as
In the folate conversion pathway, several reactions that limit 5-MTHF accumulation, such as the conversion of 10-formyl-THF to THF and 5-MTHF to THF (Fig. 4), must be blocked to prevent the reversal of the 5-MTHF formation pathway. The deletion of genes that encode the enzymes responsible for catalyzing the reverse reaction should also increase 5-MTHF flux. Indeed, in a study by Yang et al. (2020), which combined the deletion of
In conclusion, folate-producing LAB, including both folate-efficient and -overproducing bacteria, can be used to produce biofolate-rich products. Although various fermentation methods have been found to successfully increase folate production, the regulation of feedback inhibition in folate-efficient bacteria limits their application in foods that do not contain folate. This limitation must be considered when selecting LAB isolates and suitable food types as fermentation substrates to ensure that their application does not decrease folate levels in the final product. The application of folate overproducing bacteria is thought to be advantageous because these organisms can produce folate in quantities that exceed their growth requirements, ultimately increasing the folate concentration in the corresponding food product. Their ability to produce folate in the presence or absence of external folate leads to unlimited application in various foods, thereby rendering the production of biofolate-rich products more facile. Although it is challenging to find this type of bacterium naturally, genetic engineering techniques can be employed for their generation, such as in the case of metabolically engineered generally regarded as safe bacteria, which have been widely used and developed over the last few decades for the bioproduction of specific metabolites.
FUNDING
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
This work was funded by the Ministry of Research, Technology and Higher Education of the Republic of Indonesia under the scheme of Master of Education toward Doctoral Scholarship Program for Excellence Undergraduate (PMDSU), under contract no.: 3/E1/KP.PTNBH/2019.
AUTHOR DISCLOSURE STATEMENT
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
The authors declare no conflict of interest.
AUTHOR CONTRIBUTIONS
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
Concept and design: LN. Analysis and interpretation: FAM. Data collection: FAM. Writing the article: FAM, LN, HNL, SN. Critical revision of the article: LN, FAM, HNL. Final approval of the article: all authors. Obtained funding: LN. Overall responsibility: FAM, LN, HNL, SN.
References
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
- References
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Article
Review
Prev Nutr Food Sci 2023; 28(4): 386-400
Published online December 31, 2023 https://doi.org/10.3746/pnf.2023.28.4.386
Copyright © The Korean Society of Food Science and Nutrition.
Hypothetical Regulation of Folate Biosynthesis and Strategies for Folate Overproduction in Lactic Acid Bacteria
Fenny Amilia Mahara1 , Lilis Nuraida1,2 , Hanifah Nuryani Lioe1 , Siti Nurjanah1,2
1Department of Food Science and Technology, Faculty of Agricultural Engineering and Technology and 2Southeast Asian Food and Agricultural Science and Technology (SEAFAST) Center, IPB University (Bogor Agricultural University), Bogor 16680, Indonesia
Correspondence to:Lilis Nuraida, E-mail: lnuraida@apps.ipb.ac.id
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Folate (vitamin B9) is an essential nutrient for cell metabolism, especially in pregnant women; however, folate deficiency is a major global health issue. To address this issue, folate-rich fermented foods have been used as alternative sources of natural folate. Lactic acid bacteria (LAB), which are commonly involved in food fermentation, can synthesize and excrete folate into the medium, thereby increasing folate levels. However, screening for folate-producing LAB strains is necessary because this ability is highly dependent on the bacterial strain. Some strains of LAB consume folate, and their presence in a fermentation mix can lower the folate levels of the final product. Since microorganisms efficiently regulate folate biosynthesis to meet their growth needs, some strains of folate-producing LAB can deplete folate levels if folate is available in the media. Such folate-efficient producers possess a feedback inhibition mechanism that downregulates folate biosynthesis. Therefore, the application of folate-overproducing strains may be a key strategy for increasing folate levels in media with or without available folate. Many studies have been conducted to screen folate-producing bacteria, but very few have focused on the identification of overproducers. This is probably because of the limited understanding of the regulation of folate biosynthesis in LAB. In this review, we discuss the roles of folate-biosynthetic genes and their contributions to the ability of LAB to synthesize and regulate folate. In addition, we present various hypotheses regarding the regulation of the feedback inhibition mechanism of folate-biosynthetic enzymes and discuss strategies for obtaining folate-overproducing LAB strains.
Keywords: biosynthesis, folate, gene expression regulation, lactic acid bacteria
INTRODUCTION
Folate (vitamin B9) is a conjugated compound composed of a pteridine ring, para-aminobenzoic acid (PABA), and glutamate (Combs, 2008). Folates exist in various forms that are characterized by the oxidation level of the pteridine ring, substituent bound to the N5 and/or N10 position of the tetrahydrofolate (THF) molecule, and number of glutamate residues comprising the polyglutamate tail (Fig. 1). If the pteridine ring is fully oxidized, folate is known as folic acid; if it is partially reduced, it is known as dihydrofolate (DHF); and if it is fully reduced, it is known as THF. Examples of forms with different substituents bound to the N5 and N10 positions of the THF molecule include 5-methyl-THF (5-MTHF), 5-formyl-THF, 10-formyl-THF, 5,10 methylene-THF, 5-formimino-THF, and 5,10-methenyl-THF (Saini et al., 2016; Saubade et al., 2017). Mono-, di-, and triglutamate folates contain one to three glutamate residues in the polyglutamate tail, whereas polyglutamate folates contain more than three glutamate residues (Combs, 2008; Saini et al., 2016).
-
Figure 1. Chemical structure of (A) folic acid (fully oxidized), (B) dihydrofolate (partially reduced), (C) tetrahydrofolate (THF, completely reduced). (D) THF derivatives with substituents bound to the N5 and/or N10 position.
THF and its derivatives act as cofactors, accepting and donating carbon atoms in one-carbon metabolic reactions, such as DNA synthesis, amino acid synthesis, and the methylation cycle (de Crécy-Lagard et al., 2007; Green and Matthews, 2007; Ohrvik and Witthoft, 2011). DHF is an inactive form of folate that must be reduced to THF during folate biosynthesis in various green plants, bacteria, and yeasts (Green and Matthews, 2007; Wegkamp, 2008). In contrast, folic acid is a synthetic form of folate that is chemically produced in the monoglutamate form and bears no substituents at the N5 and N10 positions (Fig. 1) (Mahara et al., 2019).
Owing to its role as an essential micronutrient, folate requirements in the human body must be adequately fulfilled, particularly during pregnancy (Castaño et al., 2017). Inadequate folate intake during pregnancy can cause various problems, including the risk of miscarriage or stillbirth, low birth weight, preeclampsia, prematurity, and neural tube defects (Castaño et al., 2017). However, the use of synthetic folate as a dietary supplement and fortifier has long been avoided, owing to its potential long-term adverse effects on human health (Laiño et al., 2014; Patel and Sobczyńska-Malefora, 2017; Greppi et al., 2017). As an alternative,
Previous gene overexpression studies aimed at to generating folate overproducing bacteria have reported the possibility of feedback inhibition via folate-biosynthetic enzymes (Sybesma et al., 2003a; Wegkamp et al., 2007). However, to date, no review has focused on the regulation of folate biosynthesis in LAB or the role of folate-biosynthetic genes in folate-producing and folate-consuming bacteria. This information is expected to lead to an improved understanding of the behavioral patterns of LAB during folate production. Considering previous studies, this review discusses various hypotheses related to the regulation of folate biosynthesis, with the aim of adding to the understanding of how LAB regulate folate synthesis, excretion, and consumption.
FOLATE-PRODUCING LAB
Various genera and species of LAB produce both intracellular and extracellular folate, and this ability is highly strain dependent (Laiño et al., 2012; Greppi et al., 2017). Folate-producing LAB can be isolated at varying levels from various sources, including food sources (raw or fermented) and the digestive tract (Table 1). Strains obtained from the digestive tract can be used as folate producing probiotics, whereas those isolated from fermented foods can be used as starter microbes to manufacture folate-rich food products (Rossi et al., 2011).
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Table 1 . Folate-producing lactic acid bacteria from various sources.
Species (no. of strains tested) Source Test medium No. of folate-producing strains Folate production (ng/mL) Reference Lactobacillus sp. (50)Traditional Iranian yogurt and doogh Skim milk medium 50 2.8~66.6 Dana et al., 2010 Streptococcus thermophilus (51)Artisanal Argentinean yogurt FACM 32 4.3~76.6 Laiño et al., 2012 Lactobacillus delbrueckii ssp.bulgaricus (41)4 3.6~86.2 Lactiplantibacillus plantarum (18)Artisanal Argentinean dairy products FACM 15 1.4~57.2 Laiño et al., 2014 Lactobacillus acidophilus (8)2 7.4~37.2 Limosilactobacillus fermentum (12)2 0.2~6.9 Lacticaseibacillus paracasei ssp.paracasei (12)4 9.2~38.7 Lacticaseibacillus casei ssp.casei (3)0 − L.casei (1)1 1.5 Lactobacillusamylovorus (1)1 81.2 Lactiplantibacillus plantarum (2)Cereals FACM 2 30.7~57.3 Salvucci et al., 2016 Limosilactobacillus fermentum (5)5 5.8~51.1 Lactobacillus pentosus (3)3 37.9~61.8 Levilactobacillus brevis (1)1 41.3 Pediococcus acidilactici (6)6 38.6~55.8 Pediococcus pentosaceus (1)1 51.7 Latilactobacillus sakei (28)Tocosh (fermented potato porridge) FACM 28 35~138 Mosso et al., 2018 Lacticaseibacillus casei (9)4 50~69 Limosilactobacillus fermentum (1)1 29 Levilactobacillus brevis (1)0 − Lactobacillus sp. (2)1 58 Streptococcus thermophilus (8)Fresh milk and several kinds of cheese (cow, goat, and buffalo) FACM 8 5.06~147.67 Tarrah et al., 2018 Bifidobacterium adolescentis (10)Human and animals Folate-free semi-synthetic medium (SM7) 17 0.6~82.0 Pompei et al., 2007 Bifidobacterium animalis (7)Bifidobacterium bifidum (6)Bifidobacterium breve (15)Bifidobacterium catenulatum (1)Bifidobacterium cuniculi (3)Bifidobacterium dentium (1)Bifidobacterium globosom (2)Bifidobacterium infantis (5)Bifidobacterium lactic (1)Bifidobacterium longum (17)Bifidobacterium magnum (1)Bifidobacterium pseudocatenulatum (3)Bifidobacterium suis (1)Bifidobacterium thermophilus (1)Bifidobacterium sp. (2)B. adolescentis (3)Feces of adults and children FFM 10 <10,000~92,950 D’Aimmo et al., 2012 B. bifidum (3)B. breve (1)B. catenulatum (2)B. longum (5)B. pseudocatenulatum (1)B. animalis (3)Animal feces FACM, folic acid casei medium; FFM, folate-free medium..
Folate synthesis in cells and its excretion into the medium are critical for understanding the potential applications of such systems in food. For example, extracellular folate produced by LAB can increase folate levels in fermented food products. Folate-producing probiotics can be utilized more effectively as producers of extracellular folate because their cells are not lysed in the digestive tract; therefore, they can colonize the colon to continuously provide extracellular folate to the body. In the context of nonprobiotic folate producers, intracellular folate can be produced following cell lysis in the digestive tract, where it can subsequently be absorbed (LeBlanc et al., 2015; Greppi et al., 2017).
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION
Folate biosynthesis requires three precursors as the main building blocks: guanosine triphosphate (GTP), PABA, and glutamate. The GTP molecule, which forms the pteridine component of the folate structure, is derived from purine biosynthesis and is an essential molecule synthesized by all LAB (Saubade et al., 2017). Although glutamate can be synthesized through the conversion of α-ketoglutarate from glycolytic intermediates, almost no LAB can synthesize this compound (Lapujade et al., 1998); therefore, glutamate is usually obtained from an external supply (i.e., taken up from the medium) via the salvage pathway (Fig. 2) (de Crécy-Lagard et al., 2007; Iyer and Tomar, 2009). The PABA precursor is derived from chorismate and synthesized via a pathway that is also involved in the aromatic amino acid, glycolysis, pentose phosphate, and shikimate pathways (Rad et al., 2016). Only certain LAB can synthesize this precursor (Rossi et al., 2011); therefore, PABA tends to be obtained from an external supply via the salvage route (Fig. 2) (de Crécy-Lagard et al., 2007).
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Figure 2. Folate biosynthesis and salvage pathways in lactic acid bacteria and the genes involved (Orsomando et al., 2006; de Crécy-Lagard et al., 2007; Noiriel et al., 2007; Wegkamp, 2008; Rad et al., 2016). The black arrows indicate the folate biosynthesis pathway, followed by the names of the genes that encode folate biosynthetic enzymes. The blue arrows show the intermediate salvage pathway (PABA and glutamate) obtained from the oxidative breakdown of folate (marked by red dashed arrows) in the cell and taken up from outside the cell (when intermediate compounds are available in the environment or medium). The green arrows indicate intact folate salvage pathways for folic acid and THF (mono). GTP, guanosine triphosphate; PABA, para-aminobenzoic acid; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; THF (mono), tetrahydrofolate-monoglutamate; THF (poly), tetrahydrofolate-polyglutamate; PABA-Glu, PABA-glutamate; NI, not identified.
The
In the first step of folate biosynthesis, the genes required for the formation of the PABA precursor include
The presence of folate-biosynthetic enzyme-encoding genes has been investigated in various LAB species
The DHFR enzyme, encoded by
The
FOLATE SALVAGE PATHWAY
In the folate-biosynthetic pathway, the availability of the three folate precursors (DHPPP, PABA, and glutamate) is critical for modulating THF synthesis. LAB that lack genes for the biosynthesis of these three substances rely on the salvage pathway, which occurs either within the cell or using compounds that are taken up from outside the cell (i.e., when intermediate compounds are available in the environment or medium). In parasites, such as
The first step in folate biosynthesis is the formation of pterin compounds (e.g., DHPPP). The pterins are a family of aromatic compounds that function as cofactors for aromatic hydroxylases and are involved in the metabolism of aromatic amino acids, such as phenylalanine, tyrosine, and tryptophan (Scott et al., 2000; Noiriel et al., 2007). To ensure metabolic activity, pterin must be present in its reduced form (i.e., dihydropterin for folate biosynthesis or tetrahydropterin as a cofactor) (Noiriel et al., 2007). However, pterin is highly unstable and easily oxidized to generate its aromatic form. The reduction of pterin to THF also renders it more susceptible to oxidative breakdown, resulting in the production of oxidized pterin compounds, such as dihydropterin-6-aldehyde, tetrahydropterin-6-aldehyde, PABA-Glu (
Only pterin and folate auxotrophic parasites, such as
Another component required for folate biosynthesis is PABA, which can be obtained via PABA biosynthetic and salvage pathways (Fig. 2). The PABA salvage pathway begins with the oxidative breakdown of folate, which leads to the generation of PABA monoglutamate (PABA-Glu) or PABA-Glun (Orsomando et al., 2006; Noiriel et al., 2007). PABA-Glu can be reused for folate biosynthesis in two ways: through direct processing by the DHPS enzyme in the PABA-Glu form or via hydrolysis into PABA and glutamate (catalyzed by intracellular aminoacyl aminohydrolase or carboxypeptidase G enzymes) and further processing of PABA by DHPS (Fig. 2) (Hussein et al., 1998; Orsomando et al., 2006). Furthermore, PABA can be salvaged from exogenous sources in the environment or through medium supplementation (de Crécy-Lagard et al., 2007). Therefore, folate-producing bacteria that lack the PABA biosynthetic ability can still produce folate from supplemented PABA via the salvage pathway.
Glutamate can also be obtained via a salvage pathway (Orsomando et al., 2006; Wegkamp, 2008), which is derived from the oxidative breakdown products of folate to produce PABA-Glu or PABA-Glun. Free monoglutamate (Glu) and polyglutamate (Glun) from both products can be reused for folate biosynthesis after hydrolysis by intracellular aminoacyl aminohydrolases or carboxypeptidase G. Free monoglutamate can then be processed further by the DHFS enzyme (encoded by the
All folate-requiring bacteria can take up intact folate, including folic acid and THF-monoglutamate, via intact folate salvage pathways (Fig. 2) (de Crécy-Lagard et al., 2007). As a synthetic form of folate, folic acid can only be obtained through medium supplementation. In contrast, THF-monoglutamate can be salvaged from natural folate in foods and from bacterial folates in both fermented food and the digestive tract (de Crécy-Lagard et al., 2007; Engevik et al., 2019). Therefore, the presence of folate-producing bacteria in fermented foods and the colon benefits other bacterial populations because folate produced by folate-producing bacteria can be utilized by other folate-consuming bacteria.
FOLATE-EFFICIENT BACTERIA
Most bacteria (known as folate-efficient bacteria) naturally produce metabolites for growth only when needed; thus, their folate production levels are generally not excessive (Pompei et al., 2007; Rossi et al., 2011). In addition, when the required folate level is reached, the bacteria usually halt their production. Moreover, folate is consumed rather than resynthesized when it is available in the media (Mahara et al., 2021). These bacteria must possess specific metabolic regulations that can efficiently control folate biosynthesis in their cells (Scott et al., 2000). Despite an incomplete understanding of folate-biosynthetic regulation, several studies have identified a possible mechanism for feedback inhibition via the end products of folate-biosynthetic enzymes. Such regulation may include inhibition of DHFR enzyme activity (encoded by
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Figure 3. Summary of the hypothetical feedback inhibition mechanism of folate biosynthesis in lactic acid bacteria. GTP, guanosine triphosphate; PABA, para-aminobenzoic acid; HPPK, hydroxymethyl dihydropterin pyrophosphokinase; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; DHPS, dihydropteroate synthase; DHFR, dihydrofolate reductase.
The activity of the DHFR enzyme in catalyzing the conversion of DHF to THF is possibly inhibited by the final product, THF. Indeed, Sybesma et al. (2003a) reported that increasing folate production in
In addition to DHFR and DHPS, the activity of the HPPK enzyme, which converts 6-hydroxymethyl-7,8-di-hydropterin to DHPPP, can also be inhibited by its final product, DHPPP, wherein the rate of DHPPP formation is highly dependent on its utilization by the DHPS enzyme (Mouillon et al., 2002; Meucci et al., 2018). In this context, Laiño et al. (2019) reported a feedback inhibition mechanism for the expression of the
The activities of folate-biosynthetic enzymes can be controlled not only by their own end products, but also by the end products of other enzymes involved in the folate-biosynthetic pathway (Fig. 3). DHPS may also be regulated by DHF and THF, which are end products of other enzymes involved in folate biosynthesis. Both products had relatively low
Intermediate one-carbon metabolic products can also regulate folate biosynthesis. For example, the methionine repressor (
Currently, little is known about the regulation of the DHNA enzyme encoded by
FOLATE-OVERPRODUCING BACTERIA
Some folate-producing bacteria can synthesize folate beyond their growth requirements, and are not influenced by the presence or absence of folate in the medium (Pompei et al., 2007). These folate-overproducing bacteria can be found naturally (Greppi et al., 2017; Albano et al., 2020) or can be produced through genetic engineering (Sybesma et al., 2003a; Wegkamp et al., 2007). Unlike folate-efficient bacteria, folate-overproducing bacteria do not regulate folate biosynthesis in their cells; therefore, the available folate in the medium does not lead to the downregulation of folate. In this context, Pompei et al. (2007) reported that folate levels produced by
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Table 2 . Species of folate-overproducing lactic acid bacteria.
Species No. of strains tested No. of folate-overproducing strains Folate production (ng/mL) Reference Limosilactobacillus fermentum 69 60 0.3~120.9 Greppi et al., 2017 Lactiplantibacillus plantarum 21 17 3.1~110.7 Lactobacillus paraplantarum 6 5 4.5~16.2 Pediococcus acidilactici 16 10 0.9~16.5 Pediococcus pentosaceus 37 0 − Lactiplantibacillus plantarum 15 15 5.64~34.41 Albano et al., 2020 Lactococcus lactis 15 1 1.21 Streptococcus thermophilus 8 1 10.46 Lactobacillus delbrueckii ssp.bulgaricus 6 6 2.86~40 Lacticaseibacillus casei 7 7 3.33~7.29 Lacticaseibacillus rhamnosus 7 3 1.28~8.87 Lacticaseibacillus paracasei 2 2 1.50
Despite the wide variety of folate-overproducing LAB species, the discovery of folate overproducers remains a complex task. For example, Mahara et al. (2021) found that three folate-producing LAB (
FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
The stress-resistance method is a classic mutagenesis technique that can trigger spontaneous and directed mutagenesis to obtain mutants with desired phenotypic characteristics (Wegkamp, 2008; Renault, 2010). In this process, microorganisms are exposed to compounds that can inhibit their biosynthetic pathways, such as chemical analogs of targeted metabolites or intermediates (Wegkamp, 2008; Stanbury et al., 2017). Owing to their highly similar structures, these metabolic analogs can compete for binding to biosynthetic enzymes by imitating their control properties, interfering with metabolite biosynthesis, and inhibiting growth (Stanbury et al., 2017). In analog-resistant mutants, this condition triggers excessive production of analogous metabolites, providing additional opportunities for binding to the enzyme. As a result, the enzyme becomes resistant to analog inhibition and loses control of the end-product feedback inhibition (Kumar and Gomes, 2005; Wegkamp, 2008; Stanbury et al., 2017). When regrown in analog-free media, resistant mutants overproduce metabolites without inhibition and excrete them into the medium (Kumar and Gomes, 2005).
The mechanism of analog stress resistance can also be considered in the context of the folate-biosynthetic pathway, which is inhibited by folate analogs and analogs of folate intermediates. For example, Wegkamp (2008) reported that a genetically engineered strain of the folate overproducer
Folate overproduction, which can lead to methotrexate resistance, may occur because high intracellular folate production provides additional possibilities to compete with methotrexate for binding to the DHFR enzyme. Thus, the presence of methotrexate did not affect the bacterial growth. However, this resistance mode is more effective if the bacteria are grown in media lacking folate and folate-dependent metabolites, such as purines (inosine, guanine, adenine, and xanthine), pyrimidines (orotic acid, thymidine, and uracil), glycine, methionine, and pantothenate. The folate-dependent metabolites in the media neutralize the growth inhibitory effect of methotrexate; therefore, the resulting bacterial growth is not considered a resistance effect of folate overproduction but is instead due to the presence of folate-dependent metabolites in the media (Harvey, 1973; Wegkamp et al., 2009). Wegkamp (2008) also reported that folate production by
Previous studies have successfully applied this selection method to folate analog-resistant mutants to obtain folate-overproducing mutants (Wegkamp et al., 2009; Zhang et al., 2020). For example, Wegkamp et al. (2009) reported that 1 out of 576 single colonies of
However, the generated mutants that exhibit the folate overproduction phenotype frequently revert to their wild-type phenotype after repeated growth in media without the required analogs. In this context, Wegkamp (2008) reported that the high degree of folate production by methotrexate-resistant mutants of
FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
As an alternative strategy for producing folate-overproducing bacteria, microbial genetic engineering can be carried out to strengthen folate-biosynthetic pathways and shift the flux of specific metabolites to target metabolite bioproduction. This can be achieved by inactivating genes, suppressing the expression of unwanted genes, and/or controlling the overexpression of specific genes (Sybesma et al., 2003a; Yang et al., 2020). Reactions that inhibit the accumulation of certain metabolites can be blocked or reduced, whereas reactions that promote the biosynthesis of these metabolites can be amplified (Yang et al., 2020). As outlined in Table 3, genetic modifications have been demonstrated to increase extracellular folate production and alter the distribution and accumulation of intracellular folate. Although the regulation of folate biosynthesis in microorganisms has yet to be fully identified and understood (Wegkamp, 2008; Mahara et al., 2021), several factors that limit folate biosynthesis, such as feedback inhibition of several folate-biosynthetic genes, reversible conversion of the folate form, and complex metabolic pathways, may also influence the application of genetic engineering techniques to construct folate-overproducing strains (Sybesma et al., 2003a; Lu et al., 2019; Yang et al., 2020).
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Table 3 . Folate overproduction in metabolically engineered strains.
Microorganisms Genetic engineering techniques Results Reference Lactococcus lactis MG1363Overexpression of folKE Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Sybesma et al., 2003a Overexpression of folKE andfolP Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Overexpression of folKE andfolC Increasing the production of extracellular 4-fold (±10→±40 ng/mL) and intracellular folate 3-fold (±50→±150 ng/mL) Overexpression of folA There is no increase in extracellular folate production, and intracellular folate production decreases 2-fold (±75→±35 ng/mL) Lactococcus lactis NZ9000Cloning and expression of the hgh gene (human γ-glutamyl hydrolase )Increasing the production of extracellular folate 6-fold (±10→±60 ng/mL) Sybesma et al., 2003c Lactococcus lactis NZ9000Overexpression of PABA genes ( pabA andpabBC )There is no increase in folate production Wegkamp et al., 2007 Overexpression of PABA and folate genes ( folB ,folP ,folKE ,folQ ,folC )Increasing the level of total folate (91.7→2,700 ng/mL) Ashbya gossypii ATCC 10895Overexpression of AgFOL1 andAgFOL3 ; or overexpression ofAgFOL1 andAgFOL2 Increasing the level of total folate up to approximately 2.5-fold Serrano-Amatriain et al., 2016 Overexpression of AgFOL2 andAgFOL3 Increasing the level of total folate up to 11-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 Increasing the level of total folate up to 16-fold (680 ng/mL) Deletion of AgMET7 (FPGS)Increasing the level of total folate up to 5.7-fold (292.15 ng/mL), with the increasing proportions of extracellular folate ±30% Repression of AgRIB1 (GTP cyclohydrolase II)Increasing the level of total folate up to 4.2-fold Deletion of ADE12 (adenylosuccinate synthase)Decreasing the level of total folate Deletion of ADE12 andAgMET7 Increasing the level of total folate up to 11.9-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; and deletion ofADE12 Increasing the level of total folate up to 15-fold (677 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; repression ofAgRIB1 ; and deletion ofADE12 Increasing the level of total folate up to 21-fold (964 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; deletion ofAgMET7 andADE12 Increasing the level of total folate up to 51-fold (2,000 ng/mL) Overexpression of AgFOL2 andAgFOL3 ; deletion ofAgMET7 andADE12 ; and repression ofAgRIB1 Increasing the level of total folate up to 146-fold (6,595 ng/mL) Bacillus subtilis 168Deletion of yitJ There is no increase in folate production Yang et al., 2020 Deletion of yitJ ; cloning and overexpression ofmetF Increasing the production of 5-MTHF 22.3-fold
(10.28→229.62 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF Increasing the production of 5-MTHF 24.3-fold (10.28→250 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF anddfrA Increasing the production of 5-MTHF 26.4-fold (10.28→271.64 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA , andfolC Increasing the production of 5-MTHF 38.9-fold (10.28→±400 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC , andpabB Increasing the production of 5-MTHF 38.9-fold
(10.28→±400 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB , andfolE Increasing the production of 5-MTHF 48.6-fold (10.28→±500 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA Increasing the production of 5-MTHF 93.4-fold
(10.28→960.27 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpanB3 Increasing the production of 5-MTHF 124.5-fold (10.28→1,280 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofthyA1 Increasing the production of 5-MTHF 135.2-fold (10.28→1,390 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA1 Increasing the production of 5-MTHF 140-fold
(10.28→1,440 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression oftrpE3 Increasing the production of 5-MTHF 145-fold
(10.28→1,490 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA2 Increasing the production of 5-MTHF 154-fold
(10.28→1,584.34 ng/mL)Lactococcus lactis NZ9000Overexpression of metF Increasing the production of intracellular 5-MTHF up to 18 ng/mL Lu et al., 2019 Overexpression of dfrA There is no increase in folate production Overexpression of thyA There is no increase in folate production Overexpression of glyA There is no increase in folate production Overexpression of folD There is no increase in folate production Overexpression of metF anddfrA Increasing the production of intracellular 5-MTHF up to ±30 ng/L Overexpression of metF andglyA Increasing the production of intracellular 5-MTHF up to ±33 ng/L Overexpression of metF andthyA Increasing the production of intracellular 5-MTHF up to ±23 ng/L Overexpression of metF ,glyA , andfolE Increasing the production of intracellular 5-MTHF up to ±50 ng/L Overexpression of metF ,dfrA , andfolE Increasing the production of intracellular 5-MTHF up to ±73 ng/L Overexpression of metF ,dfrA ,folE , and the G6PDH geneIncreasing the production of intracellular 5-MTHF up to ±100 ng/L Overexpression of metF ,dfrA ,folE , the G6PDH gene, andfau Increasing the production of intracellular 5-MTHF up to ±132 ng/L
In the first step of the folate-biosynthetic pathway (Fig. 4), which utilizes GTP as a precursor, the
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Figure 4. Schematic of genetic engineering of genes in lactic acid bacteria to develop folate overproducers, based on previous studies. The blue arrows indicate that the gene overexpression technique increased folate productivity, whereas the red arrows indicate no increase. Blue circles represent gene repression and blue crossed circles represent gene deletion; both indicate an increase in folate productivity. GTP, guanosine triphosphate; DHPPP, 6-hydroxymethyl-7,8-dihydropterin pyrophosphate; PABA, para-aminobenzoic acid; DHP, dihydropteroate; DHF, dihydrofolate; THF (mono), tetrahydrofolate-monoglutamate; THF (poly), tetrahydro-folate-polyglutamate.
It is also possible that an increase in extracellular folate flux may occur because of the insufficient capacity of the FPGS enzyme to elongate the polyglutamate tail of all extracellular folate produced, because an elongated polyglutamate tail is required for folate retention in cells. When an increase in the extracellular folate flux is followed by an increase in the capacity of FPGS, a shift from extracellular folate flux to intracellular folate accumulation occurs. Under these circumstances, folate retention in the cell increases, leading to an increase in the intracellular folate distribution (Sybesma et al., 2003a). In contrast, when the FPGS enzyme is removed, the production of extracellular folate increases significantly because the produced folate does not possess the polyglutamate tails required for cell retention, and folate is easily excreted from the cell. Deletion of the gene encoding FPGS (
In contrast to FPGS, the GGH enzyme (encoded by the
In addition to being a folate precursor, GTP is also a substrate for the biosynthesis of riboflavin; therefore, the availability of GTP in the cell is reduced for the folate-biosynthetic pathway (Fig. 4). Although deletion of the
The overexpression of folate-biosynthetic genes that regulate feedback inhibition (e.g.,
The overexpression of
In recent years, genetic engineering techniques have focused on strategies to increase the biosynthetic flux of 5-MTHF because of its higher bioavailability compared with other forms of folate (Yang et al., 2020; Lu et al., 2019). However, accumulation of 5-MTHF in cells is limited because the conversion of various forms of folate in the 5 MTHF biosynthetic pathway is reversible and involves complex metabolic pathways (Fig. 4) (Lu et al., 2019). Therefore, to shift the metabolic flux to 5-MTHF bioproduction, reactions that inhibit 5-MTHF accumulation must be blocked, whereas those that enhance 5 MTHF biosynthesis must be amplified (Yang et al., 2020). In a study by Lu et al. (2019), the overexpression of several enzyme-encoding genes with reversible activities, such as
In the folate conversion pathway, several reactions that limit 5-MTHF accumulation, such as the conversion of 10-formyl-THF to THF and 5-MTHF to THF (Fig. 4), must be blocked to prevent the reversal of the 5-MTHF formation pathway. The deletion of genes that encode the enzymes responsible for catalyzing the reverse reaction should also increase 5-MTHF flux. Indeed, in a study by Yang et al. (2020), which combined the deletion of
In conclusion, folate-producing LAB, including both folate-efficient and -overproducing bacteria, can be used to produce biofolate-rich products. Although various fermentation methods have been found to successfully increase folate production, the regulation of feedback inhibition in folate-efficient bacteria limits their application in foods that do not contain folate. This limitation must be considered when selecting LAB isolates and suitable food types as fermentation substrates to ensure that their application does not decrease folate levels in the final product. The application of folate overproducing bacteria is thought to be advantageous because these organisms can produce folate in quantities that exceed their growth requirements, ultimately increasing the folate concentration in the corresponding food product. Their ability to produce folate in the presence or absence of external folate leads to unlimited application in various foods, thereby rendering the production of biofolate-rich products more facile. Although it is challenging to find this type of bacterium naturally, genetic engineering techniques can be employed for their generation, such as in the case of metabolically engineered generally regarded as safe bacteria, which have been widely used and developed over the last few decades for the bioproduction of specific metabolites.
FUNDING
This work was funded by the Ministry of Research, Technology and Higher Education of the Republic of Indonesia under the scheme of Master of Education toward Doctoral Scholarship Program for Excellence Undergraduate (PMDSU), under contract no.: 3/E1/KP.PTNBH/2019.
AUTHOR DISCLOSURE STATEMENT
The authors declare no conflict of interest.
AUTHOR CONTRIBUTIONS
Concept and design: LN. Analysis and interpretation: FAM. Data collection: FAM. Writing the article: FAM, LN, HNL, SN. Critical revision of the article: LN, FAM, HNL. Final approval of the article: all authors. Obtained funding: LN. Overall responsibility: FAM, LN, HNL, SN.
- Abstract
- INTRODUCTION
- FOLATE-PRODUCING LAB
DE NOVO FOLATE BIOSYNTHESIS PATHWAY AND GENE REGULATION- FOLATE SALVAGE PATHWAY
- FOLATE-EFFICIENT BACTERIA
- FOLATE-OVERPRODUCING BACTERIA
- FOLATE OVERPRODUCTION BY CHEMICAL ANALOG STRESS RESISTANCE
- FOLATE OVERPRODUCTION BY GENETIC ENGINEERING
- FUNDING
- AUTHOR DISCLOSURE STATEMENT
- AUTHOR CONTRIBUTIONS
Fig 1.
Fig 2.
Fig 3.
Fig 4.
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Table 1 . Folate-producing lactic acid bacteria from various sources
Species (no. of strains tested) Source Test medium No. of folate-producing strains Folate production (ng/mL) Reference Lactobacillus sp. (50)Traditional Iranian yogurt and doogh Skim milk medium 50 2.8~66.6 Dana et al., 2010 Streptococcus thermophilus (51)Artisanal Argentinean yogurt FACM 32 4.3~76.6 Laiño et al., 2012 Lactobacillus delbrueckii ssp.bulgaricus (41)4 3.6~86.2 Lactiplantibacillus plantarum (18)Artisanal Argentinean dairy products FACM 15 1.4~57.2 Laiño et al., 2014 Lactobacillus acidophilus (8)2 7.4~37.2 Limosilactobacillus fermentum (12)2 0.2~6.9 Lacticaseibacillus paracasei ssp.paracasei (12)4 9.2~38.7 Lacticaseibacillus casei ssp.casei (3)0 − L.casei (1)1 1.5 Lactobacillusamylovorus (1)1 81.2 Lactiplantibacillus plantarum (2)Cereals FACM 2 30.7~57.3 Salvucci et al., 2016 Limosilactobacillus fermentum (5)5 5.8~51.1 Lactobacillus pentosus (3)3 37.9~61.8 Levilactobacillus brevis (1)1 41.3 Pediococcus acidilactici (6)6 38.6~55.8 Pediococcus pentosaceus (1)1 51.7 Latilactobacillus sakei (28)Tocosh (fermented potato porridge) FACM 28 35~138 Mosso et al., 2018 Lacticaseibacillus casei (9)4 50~69 Limosilactobacillus fermentum (1)1 29 Levilactobacillus brevis (1)0 − Lactobacillus sp. (2)1 58 Streptococcus thermophilus (8)Fresh milk and several kinds of cheese (cow, goat, and buffalo) FACM 8 5.06~147.67 Tarrah et al., 2018 Bifidobacterium adolescentis (10)Human and animals Folate-free semi-synthetic medium (SM7) 17 0.6~82.0 Pompei et al., 2007 Bifidobacterium animalis (7)Bifidobacterium bifidum (6)Bifidobacterium breve (15)Bifidobacterium catenulatum (1)Bifidobacterium cuniculi (3)Bifidobacterium dentium (1)Bifidobacterium globosom (2)Bifidobacterium infantis (5)Bifidobacterium lactic (1)Bifidobacterium longum (17)Bifidobacterium magnum (1)Bifidobacterium pseudocatenulatum (3)Bifidobacterium suis (1)Bifidobacterium thermophilus (1)Bifidobacterium sp. (2)B. adolescentis (3)Feces of adults and children FFM 10 <10,000~92,950 D’Aimmo et al., 2012 B. bifidum (3)B. breve (1)B. catenulatum (2)B. longum (5)B. pseudocatenulatum (1)B. animalis (3)Animal feces FACM, folic acid casei medium; FFM, folate-free medium.
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Table 2 . Species of folate-overproducing lactic acid bacteria
Species No. of strains tested No. of folate-overproducing strains Folate production (ng/mL) Reference Limosilactobacillus fermentum 69 60 0.3~120.9 Greppi et al., 2017 Lactiplantibacillus plantarum 21 17 3.1~110.7 Lactobacillus paraplantarum 6 5 4.5~16.2 Pediococcus acidilactici 16 10 0.9~16.5 Pediococcus pentosaceus 37 0 − Lactiplantibacillus plantarum 15 15 5.64~34.41 Albano et al., 2020 Lactococcus lactis 15 1 1.21 Streptococcus thermophilus 8 1 10.46 Lactobacillus delbrueckii ssp.bulgaricus 6 6 2.86~40 Lacticaseibacillus casei 7 7 3.33~7.29 Lacticaseibacillus rhamnosus 7 3 1.28~8.87 Lacticaseibacillus paracasei 2 2 1.50
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Table 3 . Folate overproduction in metabolically engineered strains
Microorganisms Genetic engineering techniques Results Reference Lactococcus lactis MG1363Overexpression of folKE Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Sybesma et al., 2003a Overexpression of folKE andfolP Increasing the production of extracellular folate 8-fold (±10→±80 ng/mL) Overexpression of folKE andfolC Increasing the production of extracellular 4-fold (±10→±40 ng/mL) and intracellular folate 3-fold (±50→±150 ng/mL) Overexpression of folA There is no increase in extracellular folate production, and intracellular folate production decreases 2-fold (±75→±35 ng/mL) Lactococcus lactis NZ9000Cloning and expression of the hgh gene (human γ-glutamyl hydrolase )Increasing the production of extracellular folate 6-fold (±10→±60 ng/mL) Sybesma et al., 2003c Lactococcus lactis NZ9000Overexpression of PABA genes ( pabA andpabBC )There is no increase in folate production Wegkamp et al., 2007 Overexpression of PABA and folate genes ( folB ,folP ,folKE ,folQ ,folC )Increasing the level of total folate (91.7→2,700 ng/mL) Ashbya gossypii ATCC 10895Overexpression of AgFOL1 andAgFOL3 ; or overexpression ofAgFOL1 andAgFOL2 Increasing the level of total folate up to approximately 2.5-fold Serrano-Amatriain et al., 2016 Overexpression of AgFOL2 andAgFOL3 Increasing the level of total folate up to 11-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 Increasing the level of total folate up to 16-fold (680 ng/mL) Deletion of AgMET7 (FPGS)Increasing the level of total folate up to 5.7-fold (292.15 ng/mL), with the increasing proportions of extracellular folate ±30% Repression of AgRIB1 (GTP cyclohydrolase II)Increasing the level of total folate up to 4.2-fold Deletion of ADE12 (adenylosuccinate synthase)Decreasing the level of total folate Deletion of ADE12 andAgMET7 Increasing the level of total folate up to 11.9-fold Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; and deletion ofADE12 Increasing the level of total folate up to 15-fold (677 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; repression ofAgRIB1 ; and deletion ofADE12 Increasing the level of total folate up to 21-fold (964 ng/mL) Overexpression of AgFOL1 ,AgFOL2 , andAgFOL3 ; deletion ofAgMET7 andADE12 Increasing the level of total folate up to 51-fold (2,000 ng/mL) Overexpression of AgFOL2 andAgFOL3 ; deletion ofAgMET7 andADE12 ; and repression ofAgRIB1 Increasing the level of total folate up to 146-fold (6,595 ng/mL) Bacillus subtilis 168Deletion of yitJ There is no increase in folate production Yang et al., 2020 Deletion of yitJ ; cloning and overexpression ofmetF Increasing the production of 5-MTHF 22.3-fold
(10.28→229.62 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF Increasing the production of 5-MTHF 24.3-fold (10.28→250 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF anddfrA Increasing the production of 5-MTHF 26.4-fold (10.28→271.64 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA , andfolC Increasing the production of 5-MTHF 38.9-fold (10.28→±400 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC , andpabB Increasing the production of 5-MTHF 38.9-fold
(10.28→±400 ng/mL)Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB , andfolE Increasing the production of 5-MTHF 48.6-fold (10.28→±500 ng/mL) Deletion of yitJ andpurU ; and overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA Increasing the production of 5-MTHF 93.4-fold
(10.28→960.27 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpanB3 Increasing the production of 5-MTHF 124.5-fold (10.28→1,280 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofthyA1 Increasing the production of 5-MTHF 135.2-fold (10.28→1,390 ng/mL) Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA1 Increasing the production of 5-MTHF 140-fold
(10.28→1,440 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression oftrpE3 Increasing the production of 5-MTHF 145-fold
(10.28→1,490 ng/mL)Deletion of yitJ andpurU ; overexpression ofmetF ,dfrA ,folC ,pabB ,folE , andyciA ; and repression ofpheA2 Increasing the production of 5-MTHF 154-fold
(10.28→1,584.34 ng/mL)Lactococcus lactis NZ9000Overexpression of metF Increasing the production of intracellular 5-MTHF up to 18 ng/mL Lu et al., 2019 Overexpression of dfrA There is no increase in folate production Overexpression of thyA There is no increase in folate production Overexpression of glyA There is no increase in folate production Overexpression of folD There is no increase in folate production Overexpression of metF anddfrA Increasing the production of intracellular 5-MTHF up to ±30 ng/L Overexpression of metF andglyA Increasing the production of intracellular 5-MTHF up to ±33 ng/L Overexpression of metF andthyA Increasing the production of intracellular 5-MTHF up to ±23 ng/L Overexpression of metF ,glyA , andfolE Increasing the production of intracellular 5-MTHF up to ±50 ng/L Overexpression of metF ,dfrA , andfolE Increasing the production of intracellular 5-MTHF up to ±73 ng/L Overexpression of metF ,dfrA ,folE , and the G6PDH geneIncreasing the production of intracellular 5-MTHF up to ±100 ng/L Overexpression of metF ,dfrA ,folE , the G6PDH gene, andfau Increasing the production of intracellular 5-MTHF up to ±132 ng/L
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